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The alignment of protein superfamily sequences Part I: Identifying Cluster Specific Subsequences (CSS) in Protein Families
Multiple Sequence Alignments (MSA) are crucial tools in protein bioinformatics. Despite recent advances such as obtained by MAFFT and Promals3D, MSA construction of complex superfamilies remains problematic and requires ...
Cluster Specific Dunn index for co-expression detection
It is usually assumed that co-expressed genes suggest co-regulation in the underlying regulatory network. Determining sets of co-expressed genes is an important task, where significative groups of genes are defined based ...
Clustering of Bacillus strains with potential plant growth promoting activity by searching specific genetic determinants
Plant growth promoting rhizobacteria (PGPR) are beneficial bacteria which have the ability to colonize the roots and either promote plant growth through direct stimulation or by biological control of plant diseases . ...